Rejection-free Monte Carlo scheme for anisotropic particles.

نویسندگان

  • Daniel W Sinkovits
  • Stephen A Barr
  • Erik Luijten
چکیده

We extend the geometric cluster algorithm [J. Liu and E. Luijten, Phys. Rev. Lett. 92, 035504 (2004)], a highly efficient, rejection-free Monte Carlo scheme for fluids and colloidal suspensions, to the case of anisotropic particles. This is made possible by adopting hyperspherical boundary conditions. A detailed derivation of the algorithm is presented, along with extensive implementation details as well as benchmark results. We describe how the quaternion notation is particularly suitable for the four-dimensional geometric operations employed in the algorithm. We present results for asymmetric Lennard-Jones dimers and for the Yukawa one-component plasma in hyperspherical geometry. The efficiency gain that can be achieved compared to conventional, Metropolis-type Monte Carlo simulations is investigated for rod-sphere mixtures as a function of rod aspect ratio, rod-sphere diameter ratio, and rod concentration. The effect of curved geometry on physical properties is addressed.

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

Efficiency of rejection-free methods for dynamic Monte Carlo studies of off-lattice interacting particles.

We calculate the efficiency of a rejection-free dynamic Monte Carlo method for d-dimensional off-lattice homogeneous particles interacting through a repulsive power-law potential r(-p). Theoretically we find the algorithmic efficiency in the limit of low temperatures and/or high densities is asymptotically proportional to rho(p+2)/2T(-d/2) with the particle density rho and the temperature T. Dy...

متن کامل

Collective translational and rotational Monte Carlo moves for attractive particles.

Virtual move Monte Carlo is a Monte Carlo (MC) cluster algorithm forming clusters via local energy gradients and approximating the collective kinetic or dynamic motion of attractive colloidal particles. We carefully describe, analyze, and test the algorithm. To formally validate the algorithm through highlighting its symmetries, we present alternative and compact ways of selecting and accepting...

متن کامل

Monte Carlo Integration With Acceptance-Rejection

This article considers Monte Carlo integration under rejection sampling or Metropolis-Hastings sampling. Each algorithm involves accepting or rejecting observations from proposal distributions other than a target distribution. While taking a likelihood approach, we basically treat the sampling scheme as a random design, and define a stratified estimator of the baseline measure. We establish tha...

متن کامل

Rejection-free kinetic Monte Carlo simulation of multivalent biomolecular interactions

The system-level dynamics of multivalent biomolecular interactions can be simulated using a rule-based kinetic Monte Carlo method in which a rejection sampling strategy is used to generate reaction events. This method becomes inefficient when simulating aggregation processes with large biomolecular complexes. Here, we present a rejectionfree method for determining the kinetics of multivalent bi...

متن کامل

MCMC2 : A Monte Carlo code for multiply-charged clusters

We have implemented a Monte Carlo code in reduced units providing structural and thermodynamical properties of multiply-charged Lennard-Jones droplets A N , composed of N individual particles among which n are charged particles, each one carrying a charge qi (qi can be positive or negative). The cluster has a total net charge Q =  i=1,n qi (Q > 0 or Q < 0). The interactions between particles a...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

عنوان ژورنال:
  • The Journal of chemical physics

دوره 136 14  شماره 

صفحات  -

تاریخ انتشار 2012